Accession
MI0000846
Description
Rattus norvegicus
rno-mir-18a precursor miRNA
Gene family
MIPF0000001;
mir-17
Literature search
32 open access papers mention rno-mir-18a
(83 sentences)
(83 sentences)
Sequence
9244
reads,
40
reads per million, 464 experiments
ugcgugcuuuuuguucUAAGGUGCAUCUAGUGCAGAUAGugaaguagacuagcaucuACUGCCCUAAGUGCUCCUUCUggcauaagaaguuauguc
.(((((((((((((.((((((.((((.(((.((((.(((((...........)).))))))).))).)))).)))..))).)))))))).))))).
.(((((((((((((.((((((.((((.(((.((((.(((((...........)).))))))).))).)))).)))..))).)))))))).))))).
Structure
u - u -- U C U A - aagu gcgug cuuuuugu cUA AGG GCAU UAG GCAG UAG ug a ||||| |||||||| ||| ||| |||| ||| |||| ||| || g uguau gaagaaua ggU UCC CGUG AUC CGUC Auc ac a c u c CU U A C - u gauc
Annotation confidence
High
Do you think this miRNA is real?
Comments
This miRNA was predicted based on homology to a verified miRNA from mouse [1]. Its expression in rat was later verified by cloning [2]. The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [3]. The ends of the miRNA may be offset with respect to previous annotations.
Genome context
chr15: 100180015-100180110 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from rno-mir-18a
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature rno-miR-18a-5p
| Accession | MIMAT0000787 |
| Description | Rattus norvegicus rno-miR-18a-5p mature miRNA |
| Sequence | 17 - UAAGGUGCAUCUAGUGCAGAUAG - 39 |
| Evidence |
experimental
cloned [2-3], SOLiD [4] |
Mature rno-miR-18a-3p
| Accession | MIMAT0017095 |
| Description | Rattus norvegicus rno-miR-18a-3p mature miRNA |
| Sequence | 58 - ACUGCCCUAAGUGCUCCUUCU - 78 |
| Evidence |
experimental
SOLiD [4] |
References
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