Stem-loop rno-mir-23a

Accession

MI0000852

Description

Rattus norvegicus rno-mir-23a precursor miRNA

Gene family

MIPF0000027; mir-23

Literature search

48 open access papers mention rno-mir-23a
(294 sentences)

Sequence

459756 reads, 1039 reads per million, 498 experiments

cggccggcuGGGGUUCCUGGGGAUGGGAUUUgaugccagucacaaAUCACAUUGCCAGGGAUUUCCaacugaccc
.((.(((.((((((((((((.((((.((((((.((.....)))))))).)))).))))))).))))).))).)).

Structure

c  c   c     -       G    G      a  c 
 gg cgg uGGGG UUCCUGG GAUG GAUUUg ug c
 || ||| ||||| ||||||| |||| |||||| || a
 cc guc aCCUU AGGGACC UUAC CUAaac ac g
c  a   a     U       G    A      -  u 

Annotation confidence High

Genome context

chr19: 25318582-25318656 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from rno-mir-23a

Mature rno-miR-23a-5p

• Accession: MIMAT0004712
• Description: Rattus norvegicus rno-miR-23a-5p mature miRNA
• Sequence: 10 - GGGGUUCCUGGGGAUGGGAUUU - 31
• Evidence: experimental ; cloned [2], SOLiD [3]

Mature rno-miR-23a-3p

• Accession: MIMAT0000792
• Description: Rattus norvegicus rno-miR-23a-3p mature miRNA
• Sequence: 46 - AUCACAUUGCCAGGGAUUUCC - 66
• Evidence: experimental ; cloned [1-2], SOLiD [3]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 16766679
   Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
   "Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H"
   "Genes Dev (2006) 20:1732-1743


3. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249