Stem-loop rno-mir-23b

Accession

MI0000853

Description

Rattus norvegicus rno-mir-23b precursor miRNA

Gene family

MIPF0000027; mir-23

Literature search

39 open access papers mention rno-mir-23b
(223 sentences)

Sequence

487205 reads, 618 reads per million, 508 experiments

cucaccugcucuggcugcuuGGGUUCCUGGCAUGCUGAUUUgugacuugagauuaaaAUCACAUUGCCAGGGAUUACCacgcaaccaugaccuuggc
....((.(.(((((.(((.(((((((((((((((.((((((..............)))))))).))))))))))..))).))).))).)).)..)).

Structure

cuca  -u c  -   c   u   --          -  C      gugacu 
    cc  g uc ugg ugc uGG  GUUCCUGGCA UG UGAUUU      u
    ||  | || ||| ||| |||  |||||||||| || ||||||       
    gg  c ag acc acg aCC  UAGGGACCGU AC ACUAaa      g
---c  uu c  u   a   c   AU          U  -      auuaga 

Annotation confidence High

Genome context

chr17: 823222-823318 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from rno-mir-23b

Mature rno-miR-23b-5p

• Accession: MIMAT0017099
• Description: Rattus norvegicus rno-miR-23b-5p mature miRNA
• Sequence: 21 - GGGUUCCUGGCAUGCUGAUUU - 41
• Evidence: experimental ; SOLiD [4]

Mature rno-miR-23b-3p

• Accession: MIMAT0000793
• Description: Rattus norvegicus rno-miR-23b-3p mature miRNA
• Sequence: 58 - AUCACAUUGCCAGGGAUUACC - 78
• Evidence: experimental ; cloned [1-3], SOLiD [4]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 16766679
   Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
   "Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H"
   "Genes Dev (2006) 20:1732-1743


3. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249


4. PubMed ID: 17805466
   Cloning and identification of novel microRNAs from rat hippocampus
   "He X, Zhang Q, Liu Y, Pan X"
   "Acta Biochim Biophys Sin (Shanghai) (2007) 39:708-714