miRBase entry: rno-mir-138-1

Stem-loop rno-mir-138-1

Rattus norvegicus rno-mir-138-1 precursor miRNA
Gene family
MIPF0000075; mir-138

Literature search
43 open access papers mention rno-mir-138-1
(186 sentences)


1500325 reads, 1331 reads per million, 491 experiments

cu   g  ug    u       AG             UCA       gc a 
  cug ca  gugu gugggac  CUGGUGUUGUGAA   GGCCGuu  c a
  ||| ||  |||| |||||||  |||||||||||||   |||||||  | u
  gac gu  cacg cacucuG  GACCACAACACUU   UCGGCaa  g c
-g   -  --    u       -G             -CA       ga a 

Annotation confidence High
Do you think this miRNA is real?
The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [3]. The ends of the miRNA may be offset with respect to previous annotations.

Genome context
chr8: 131731726-131731824 [+]

Database links

Mature rno-miR-138-5p

Accession MIMAT0000844
Description Rattus norvegicus rno-miR-138-5p mature miRNA
Evidence experimental
cloned [1-4], Northern [1], SOLiD [5]

Mature rno-miR-138-1-3p

Accession MIMAT0004734
Description Rattus norvegicus rno-miR-138-1-3p mature miRNA
Evidence experimental
cloned [3], SOLiD [5]


  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 14691248
    Identification of many microRNAs that copurify with polyribosomes in mammalian neurons
    "Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G"
    "Proc Natl Acad Sci U S A (2004) 101:360-365

  3. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249

  4. PubMed ID: 15345052
    Microarray analysis of microRNA expression in the developing mammalian brain
    Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P, Constantine-Paton M, Horvitz HR
    Genome Biol (2004) 5:R68

  5. PubMed ID: 17805466
    Cloning and identification of novel microRNAs from rat hippocampus
    "He X, Zhang Q, Liu Y, Pan X"
    "Acta Biochim Biophys Sin (Shanghai) (2007) 39:708-714