Stem-loop osa-MIR395a

Accession

MI0001042

Description

Oryza sativa osa-MIR395a precursor miRNA

Literature search

44 open access papers mention osa-MIR395a
(185 sentences)

Sequence

2270 reads, 14.0 reads per million, 113 experiments

uuguccacuggaGUUCUCCUCAAUCCACUUCAGUagauagcuauggcuaggccucauugcauugcacuguuacauaacugugaucauggggccaaaagcuagcuauguauaGUGAAGUGCUUGGGGGAACUCcaguugacac
.((((.(((((((((((((.(((..((((((((((.((((((..((((.((((((((.(.((((((..(((....))))))))))))))))))...)))))))))).)))..))))))).)))))))))))))))).)))).

Structure

u    c             U   UC       --   g      au    --a        u c      cu   a 
 uguc acuggaGUUCUCC CAA  CACUUCA  GUa auagcu  ggcu   ggccucau g auugca  guu c
 |||| ||||||||||||| |||  |||||||  ||| ||||||  ||||   |||||||| | ||||||  |||  
 acag ugacCUCAAGGGG GUU  GUGAAGU  uau uaucga  ucga   ccggggua c uagugu  caa a
c    u             -   -C       Ga   g      --    aaa        - -      --   u 

Annotation confidence High

Comments

This sequence belongs to the miR395 family of miRNAs, which are predicted to target mRNAs coding for ATP sulphurylases [1]. Four clusters of rice miR395 genes are found on chromosomes 4, 8 and 9, and the genes have been renamed to reflect this arrangement [2].

Genome context

4: 31805494-31805635 [-]

Clustered miRNAs

6 other miRNAs are < 10 kb from osa-MIR395a

Mature osa-miR395a-5p

• Accession: MIMAT0055928
• Description: Oryza sativa osa-miR395a-5p mature miRNA
• Sequence: 13 - GUUCUCCUCAAUCCACUUCAGU - 34
• Evidence: experimental ; unknown

Mature osa-miR395a-3p

• Accession: MIMAT0000973
• Description: Oryza sativa osa-miR395a-3p mature miRNA
• Sequence: 112 - GUGAAGUGCUUGGGGGAACUC - 132
• Evidence: experimental ; Illumina [3]

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799


2. PubMed ID: 16117853
   Molecular evolution of the rice miR395 gene family
   "Guddeti S, Zhang DC, Li AL, Leseberg CH, Kang H, Li XG, Zhai WX, Johns MA, Mao L"
   "Cell Res (2005) 15:631-638


3. PubMed ID: 19903869
   Rice MicroRNA effector complexes and targets
   "Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y"
   "Plant Cell (2009) 21:3421-3435