Stem-loop osa-MIR397a

Accession

MI0001049

Description

Oryza sativa osa-MIR397a precursor miRNA

Literature search

40 open access papers mention osa-MIR397a
(212 sentences)

Sequence

4464921 reads, 13866.0 reads per million, 142 experiments

aucaaaugcaucaUUGAGUGCAGCGUUGAUGAACaacgguaaccgguccauguugaugcgcauuuggccggugaucugaucaucaUCAGCGCUUCACUCAAUCAUGcguuuggc
.((((((((((.((((((((.(((((((((((....(((..(((((((.((((......))))..)))))))...)))....))))))))))).)))))))).)))))))))).

Structure

a          c        C           ACaa   -ua       -c    ug 
 ucaaaugcau aUUGAGUG AGCGUUGAUGA    cgg   accgguc  augu  a
 |||||||||| |||||||| |||||||||||    |||   |||||||  ||||   
 gguuugcGUA UAACUCAC UCGCGACUacu    guc   uggccgg  uacg  u
c          C        U           acua   uag       uu    cg 

Annotation confidence High

Comments

This sequence belongs to the miR397 family of miRNAs, which are predicted to target mRNAs coding for laccases and beta-6 tubulin [1].

Genome context

6: 28489785-28489898 [+]

Mature osa-miR397a-5p

• Accession: MIMAT0000980
• Description: Oryza sativa osa-miR397a-5p mature miRNA
• Sequence: 14 - UUGAGUGCAGCGUUGAUGAAC - 34
• Evidence: experimental ; Illumina [2]

Mature osa-miR397a-3p

• Accession: MIMAT0055931
• Description: Oryza sativa osa-miR397a-3p mature miRNA
• Sequence: 86 - UCAGCGCUUCACUCAAUCAUG - 106
• Evidence: experimental ; unknown

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799


2. PubMed ID: 19903869
   Rice MicroRNA effector complexes and targets
   "Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y"
   "Plant Cell (2009) 21:3421-3435