miRBase entry: osa-MIR397a

Stem-loop osa-MIR397a


Accession
MI0001049
Description
Oryza sativa osa-MIR397a precursor miRNA

Literature search
39 open access papers mention osa-MIR397a
(211 sentences)

Sequence

511 reads, 361 reads per million, 2 experiments
aucaaaugcaUCAUUGAGUGCAGCGUUGAUGaacaacgguaaccgguccauguugaugcgcauuuggccggugaucugaucaucaucagcgcuucacucaaucaugcguuuggc
.((((((((((.((((((((.(((((((((((....(((..(((((((.((((......))))..)))))))...)))....))))))))))).)))))))).)))))))))).

Structure
a          C        C           acaa   -ua       -c    ug 
 ucaaaugcaU AUUGAGUG AGCGUUGAUGa    cgg   accgguc  augu  a
 |||||||||| |||||||| |||||||||||    |||   |||||||  ||||   
 gguuugcgua uaacucac ucgcgacuacu    guc   uggccgg  uacg  u
c          c        u           acua   uag       uu    cg 


Annotation confidence Not enough data
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Comments
This sequence belongs to the miR397 family of miRNAs, which are predicted to target mRNAs coding for laccases and beta-6 tubulin [1].

Genome context
Chr6: 28489785-28489898 [+]

Database links

Mature osa-miR397a

Accession MIMAT0000980
Description Oryza sativa osa-miR397a mature miRNA
Sequence 11 - UCAUUGAGUGCAGCGUUGAUG - 31
Evidence experimental
Illumina [2]
Database links

References

  1. PubMed ID: 15200956
    Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
    "Jones-Rhoades MW, Bartel DP"
    "Mol Cell (2004) 14:787-799

  2. PubMed ID: 19903869
    Rice MicroRNA effector complexes and targets
    "Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y"
    "Plant Cell (2009) 21:3421-3435