Stem-loop osa-MIR398a

Accession

MI0001051

Description

Oryza sativa osa-MIR398a precursor miRNA

Literature search

39 open access papers mention osa-MIR398a
(109 sentences)

Sequence

16494 reads, 92.0 reads per million, 134 experiments

gcugaacccagaGGAGUGGUACUGAGAACACAGGugccaauacaauguauggugagcuacuguauaauggaguaauucuguaacUGUGUUCUCAGGUCACCCCUUuggguuucuu
...(((((((((((.((((..((((((((((((..((((.(((...)))))))(((.((((.((...)).)))).))).....)))))))))))).)))).)))))))))))...

Structure

gcu           A    UA            Gugccaauacaauguauggu   c    g  u 
   gaacccagaGG GUGG  CUGAGAACACAG                    gag uacu ua  
   ||||||||||| ||||  ||||||||||||                    ||| |||| || a
   uuuggguUUCC CACU  GACUCUUGUGUc                    cuu auga gu  
uuc           C    -G            ---------------aaugu   a    g  a 

Annotation confidence High

Comments

This sequence belongs to the miR398 family of miRNAs, which are predicted to target mRNAs coding for copper superoxide dismutases and cytochrome C oxidase subunit V [1].

Genome context

10: 9216250-9216364 [-]

Mature osa-miR398a-5p

• Accession: MIMAT0055933
• Description: Oryza sativa osa-miR398a-5p mature miRNA
• Sequence: 13 - GGAGUGGUACUGAGAACACAGG - 34
• Evidence: experimental ; unknown

Mature osa-miR398a-3p

• Accession: MIMAT0000982
• Description: Oryza sativa osa-miR398a-3p mature miRNA
• Sequence: 85 - UGUGUUCUCAGGUCACCCCUU - 105
• Evidence: not_experimental

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799