Stem-loop osa-MIR399f

Accession

MI0001058

Description

Oryza sativa osa-MIR399f precursor miRNA

Literature search

60 open access papers mention osa-MIR399f
(234 sentences)

Sequence

760 reads, 5.0 reads per million, 79 experiments

ugguggauuacCGGGCCAUGUCUCCUUGGGCAGaggugaucagauugcacacuucacuucaaccucuugcucuagcuuguucucucUGCCAAAGGAGAUUUGCCCAGCaauccacau
..(((((((.(.((((...((((((((.((((((((.(((.((...(((..................))).....)).))).)))))))).))))))))..)))).).)))))))..

Structure

ug       a C    CAU        G        u   c  --auu   cacuucac 
  guggauu c GGGC   GUCUCCUU GGCAGagg gau ag     gca        u
  ||||||| | ||||   |||||||| |||||||| ||| ||     |||         
  caccuaa G CCCG   UAGAGGAA CCGUcucu uug uc     cgu        u
ua       C A    -UU        A        c   u  gaucu   ucuccaac 

Annotation confidence High

Comments

This sequence belongs to the miR399 family of miRNAs, which are predicted to target mRNAs coding for a phosphatase transporter [1].

Genome context

6: 20888631-20888747 [-]

Mature osa-miR399f-5p

• Accession: MIMAT0061193
• Description: Oryza sativa osa-miR399f-5p mature miRNA
• Sequence: 12 - CGGGCCAUGUCUCCUUGGGCAG - 33
• Evidence: experimental ; Illumina [1]

Mature osa-miR399f-3p

• Accession: MIMAT0000989
• Description: Oryza sativa osa-miR399f-3p mature miRNA
• Sequence: 87 - UGCCAAAGGAGAUUUGCCCAGC - 108
• Evidence: not_experimental

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799