Stem-loop osa-MIR156k

Accession

MI0001090

Description

Oryza sativa osa-MIR156k precursor miRNA

Literature search

125 open access papers mention osa-MIR156k
(666 sentences)

Sequence

23151 reads, 64.0 reads per million, 138 experiments

uugagagugaUGACAGAAGAGAGAGAGCACAacccggcagcagcgacgacggcggucgcuucugccagggccguguGCUCUCUGAUCUAUCUGUCAUUgccgucca
..((..((((((((((((((.((((((((((.((((((((.((((((.......)))))).))))).)))...))))))))))..))).)))))))))))..))..

Structure

uu  ga           -   -G          --a   -     c      ga 
  ga  gugaUGACAGA AGA  AGAGAGCACA   ccc ggcag agcgac  c
  ||  ||||||||||| |||  ||||||||||   ||| ||||| ||||||  g
  cu  cgUUACUGUCU UCU  UCUCUCGugu   ggg ccguc ucgcug  g
ac  gc           A   AG          gcc   a     u      gc 

Annotation confidence High

Comments

This sequence is a predicted paralogue of the previously identified miR156 family [1]. It is predicted to target mRNAs coding for Squamosa-promoter Binding Protein (SBP)-like transcription factors.

Genome context

9: 18289107-18289212 [-]

Mature osa-miR156k-5p

• Accession: MIMAT0001020
• Description: Oryza sativa osa-miR156k-5p mature miRNA
• Sequence: 11 - UGACAGAAGAGAGAGAGCACA - 31
• Evidence: not_experimental

Mature osa-miR156k-3p

• Accession: MIMAT0055944
• Description: Oryza sativa osa-miR156k-3p mature miRNA
• Sequence: 77 - GCUCUCUGAUCUAUCUGUCAUU - 98
• Evidence: experimental ; unknown

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799