Stem-loop osa-MIR162b

Accession

MI0001102

Description

Oryza sativa osa-MIR162b precursor miRNA

Literature search

26 open access papers mention osa-MIR162b
(42 sentences)

Sequence

192846 reads, 1053.0 reads per million, 142 experiments

ugggugaugccUGGGCGCAGUGGUUUAUCGAUCucuucccugccuugugcugcuccgaucgaugcccgugcugauucuugauaauauacaacgcaggaaucgaUCGAUAAGCCUCUGCAUCCAGAucucacuuu
.((((((...(((((.((((.((((((((((((..((((.(((.(((((....((.(((((..((....)))))))...)).....))))).)))))))..)))))))))))).)))).)))))...)))))).

Structure

u      ugc     C    U            uc    c   c     -cugc  --c     au  c 
 ggguga   cUGGG GCAG GGUUUAUCGAUC  uucc ugc uugug     uc   gaucg  gc c
 ||||||   ||||| |||| ||||||||||||  |||| ||| |||||     ||   |||||  ||  
 uucacu   GACCU CGUC CCGAAUAGCUag  aagg acg aacau     ag   uuagu  cg g
u      cuA     A    U            cu    -   c     auaau  uuc     --  u 

Annotation confidence High

Comments

This sequence is a predicted paralogue of the previously identified miR162 family [1]. It is predicted to target mRNAs coding for DICER-LIKE 1 (DL1) proteins.

Genome context

4: 24405899-24406032 [+]

Mature osa-miR162b-5p

• Accession: MIMAT0055951
• Description: Oryza sativa osa-miR162b-5p mature miRNA
• Sequence: 12 - UGGGCGCAGUGGUUUAUCGAUC - 33
• Evidence: experimental ; unknown

Mature osa-miR162b-3p

• Accession: MIMAT0001032
• Description: Oryza sativa osa-miR162b-3p mature miRNA
• Sequence: 104 - UCGAUAAGCCUCUGCAUCCAGA - 125
• Evidence: not_experimental

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799