Stem-loop osa-MIR164e

Accession

MI0001105

Description

Oryza sativa osa-MIR164e precursor miRNA

Literature search

73 open access papers mention osa-MIR164e
(320 sentences)

Sequence

1284741 reads, 5741.0 reads per million, 142 experiments

uugugcagggUGGAGAAGCAGGGCACGUGAGcggccauccaguguagcuucgcugcgcguccauggcggcgaacgcgcgugaucuggaguuuggauggucguuCAUGUGUCCGUCUUCUCCACCgagcacug
..((((..((((((((((..((((((((((((((((((((((..(((..((((.((((((((.....))...)))))))))).)))....))))))))))))))))))))))..))))))))))..))))..

Structure

uu    ag          CA                      --ug   cu    u      ---  a 
  gugc  ggUGGAGAAG  GGGCACGUGAGcggccauccag    uag  ucgc gcgcgu   cc u
  ||||  ||||||||||  ||||||||||||||||||||||    |||  |||| ||||||   || g
  cacg  CCACCUCUUC  CCUGUGUACuugcugguagguu    guc  agug cgcgca   gg g
gu    ag          UG                      ugag   -u    -      agc  c 

Annotation confidence High

Comments

This sequence is a predicted paralogue of the previously identified miR164 family [1]. It is predicted to target mRNAs coding for NAC domain transcription factors.

Genome context

3: 10542157-10542288 [+]

Mature osa-miR164e-5p

• Accession: MIMAT0001035
• Description: Oryza sativa osa-miR164e-5p mature miRNA
• Sequence: 11 - UGGAGAAGCAGGGCACGUGAG - 31
• Evidence: not_experimental

Mature osa-miR164e-3p

• Accession: MIMAT0055954
• Description: Oryza sativa osa-miR164e-3p mature miRNA
• Sequence: 104 - CAUGUGUCCGUCUUCUCCACC - 124
• Evidence: experimental ; unknown

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799