Stem-loop osa-MIR167f

Accession

MI0001111

Description

Oryza sativa osa-MIR167f precursor miRNA

Literature search

83 open access papers mention osa-MIR167f
(247 sentences)

Sequence

23496361 reads, 84491.0 reads per million, 142 experiments

cacaaguggaUGAAGCUGCCAGCAUGAUCUGAUcacaguaguucucuagcugaugaugauuuacaaaaccuagagacaugcaucAGAUCAUCUGGCAGUUUCAUCUucucaug
....((.(((((((((((((((.((((((((((....(((..(((((((.(..((........))..).)))))))..)))))))))))))))))))))))))))).))....

Structure

caca  u               C          caca   gu       c ga  aug 
    ag ggaUGAAGCUGCCAG AUGAUCUGAU    gua  ucucuag u  ug   a
    || ||||||||||||||| ||||||||||    |||  ||||||| |  ||    
    uc UCUACUUUGACGGUC UACUAGAcua    cgu  agagauc a  ac   u
guac  u               -          ----   ac       c aa  auu 

Annotation confidence High

Comments

This sequence is a predicted paralogue of the previously identified miR167 family [1]. It is predicted to target mRNAs coding for Auxin Response Factors (ARF transcription factors).

Genome context

10: 14723044-14723156 [-]

Mature osa-miR167f-5p

• Accession: MIMAT0001041
• Description: Oryza sativa osa-miR167f-5p mature miRNA
• Sequence: 11 - UGAAGCUGCCAGCAUGAUCUGAU - 33
• Evidence: not_experimental

Mature osa-miR167f-3p

• Accession: MIMAT0055955
• Description: Oryza sativa osa-miR167f-3p mature miRNA
• Sequence: 85 - AGAUCAUCUGGCAGUUUCAUCU - 106
• Evidence: experimental ; unknown

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799