Stem-loop osa-MIR167g

Accession

MI0001112

Description

Oryza sativa osa-MIR167g precursor miRNA

Literature search

82 open access papers mention osa-MIR167g
(243 sentences)

Sequence

19128347 reads, 74071.0 reads per million, 142 experiments

cauaagcaggUGAAGCUGCCAGCAUGAUCUGAaagcaucucaaaccagcgaucAGAUCAUCCGGCAGCUUCAUCUucucaug
(((.((.(((((((((((((.(.(((((((((..((...........))..)))))))))).))))))))))))).)).)))

Structure

   a  c             A C         aa  aucu 
cau ag aggUGAAGCUGCC G AUGAUCUGA  gc    c
||| || ||||||||||||| | |||||||||  ||    a
gua uc UCUACUUCGACGG C UACUAGAcu  cg    a
   c  u             C -         ag  acca 

Annotation confidence High

Comments

This sequence is a predicted paralogue of the previously identified miR167 family [1]. It is predicted to target mRNAs coding for Auxin Response Factors (ARF transcription factors).

Genome context

3: 3347682-3347763 [+]

Mature osa-miR167g-5p

• Accession: MIMAT0001042
• Description: Oryza sativa osa-miR167g-5p mature miRNA
• Sequence: 11 - UGAAGCUGCCAGCAUGAUCUGA - 32
• Evidence: not_experimental

Mature osa-miR167g-3p

• Accession: MIMAT0060812
• Description: Oryza sativa osa-miR167g-3p mature miRNA
• Sequence: 54 - AGAUCAUCCGGCAGCUUCAUCU - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799