Stem-loop osa-MIR168b

Accession

MI0001116

Description

Oryza sativa osa-MIR168b precursor miRNA

Literature search

62 open access papers mention osa-MIR168b
(203 sentences)

Sequence

478 reads, 4.0 reads per million, 62 experiments

uggucuugugaggcuuggugcagcucGGGAACUGUUCUUGAUGGACUggcaggaacuccauguccaccacugccacuccuguguuguggcauuccuccuugccguu
.((.(..(.((((..((.((((((.(((((...((...((.((((((((.((...))))).))))).))..))...))))).)))))).))..)))))..)))...

Structure

--u  u uu u    cu  g      u     ACU  UCU  A     -   c  g 
   gg c  g gagg  ug ugcagc cGGGA   GU   UG UGGAC Ugg ag  
   || |  | ||||  || |||||| |||||   ||   || ||||| ||| || a
   cc g  c cucc  ac guguug guccu   cg   ac accug acc uc  
uug  - uu -    uu  g      u     cac  -uc  c     u   -  a 

Annotation confidence Not enough data

Comments

This sequence is a predicted paralogue of the previously identified miR168 family [1]. It is predicted to target mRNAs coding for the ARGONAUTE protein.

Genome context

2: 27336428-27336533 [+]

Mature osa-miR168b-5p

• Accession: MIMAT0001046
• Description: Oryza sativa osa-miR168b-5p mature miRNA
• Sequence: 27 - GGGAACUGUUCUUGAUGGACU - 47
• Evidence: not_experimental

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799