Stem-loop osa-MIR169b

Accession

MI0001117

Description

Oryza sativa osa-MIR169b precursor miRNA

Literature search

61 open access papers mention osa-MIR169b
(323 sentences)

Sequence

204930 reads, 1460.0 reads per million, 142 experiments

gaacggaaugCAGCCAAGGAUGACUUGCCGGuacguguaugcauguuucaagguacuauaugugcccccaacuguuuuagauccaugcugacauuuuccGGCAAGUUGUCCUUGGCUACgucuuguuc
((((((.(((.((((((((((((((((((((...((((..(((((..((..(((((.....))))).............))..)))))..))))...)))))))))))))))))))).))).))))))

Structure

      a   C                    uac    au     uu  -----------aa     u 
gaacgg aug AGCCAAGGAUGACUUGCCGG   gugu  gcaug  uc             gguac a
|||||| ||| ||||||||||||||||||||   ||||  |||||  ||             ||||| u
cuuguu ugC UCGGUUCCUGUUGAACGGcc   uaca  cguac  ag             ccgug a
      c   A                    uuu    gu     cu  auuuugucaaccc     u 

Annotation confidence High

Comments

This sequence is a predicted paralogue of the previously identified miR169 family [1]. It is predicted to target mRNAs coding for the CCAAT Binding Factor (CBF) and HAP2-like transcription factors.

Genome context

6: 27295908-27296035 [-]

Mature osa-miR169b-5p

• Accession: MIMAT0001047
• Description: Oryza sativa osa-miR169b-5p mature miRNA
• Sequence: 11 - CAGCCAAGGAUGACUUGCCGG - 31
• Evidence: not_experimental

Mature osa-miR169b-3p

• Accession: MIMAT0055956
• Description: Oryza sativa osa-miR169b-3p mature miRNA
• Sequence: 100 - GGCAAGUUGUCCUUGGCUAC - 119
• Evidence: experimental ; unknown

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799