Stem-loop osa-MIR169c

Accession

MI0001118

Description

Oryza sativa osa-MIR169c precursor miRNA

Literature search

62 open access papers mention osa-MIR169c
(313 sentences)

Sequence

277157 reads, 2072.0 reads per million, 142 experiments

gaacgggaugCAGCCAAGGAUGACUUGCCGGcuccugguauugggggaaucucagcuuugcugaagcgccuuggaguuagccGGCAAGUCUGUCCUUGGCUACAccuagcuc
....(((.((.((((((((((((((((((((((.......((.((((....(((((...)))))....)))).))...)))))))))))).)))))))))).))))).....

Structure

-gaac   a  C          -            ccuggua  g    aauc     u 
     ggg ug AGCCAAGGAU GACUUGCCGGcu       uu gggg    ucagc  
     ||| || |||||||||| ||||||||||||       || ||||    ||||| u
     ucc AC UCGGUUCCUG CUGAACGGccga       ag uucc    agucg  
cucga   -  A          U            ----uug  g    gcga     u 

Annotation confidence High

Comments

This sequence is a predicted paralogue of the previously identified miR169 family [1]. It is predicted to target mRNAs coding for the CCAAT Binding Factor (CBF) and HAP2-like transcription factors.

Genome context

4: 30712338-30712449 [-]

Mature osa-miR169c-5p

• Accession: MIMAT0001048
• Description: Oryza sativa osa-miR169c-5p mature miRNA
• Sequence: 11 - CAGCCAAGGAUGACUUGCCGG - 31
• Evidence: not_experimental

Mature osa-miR169c-3p

• Accession: MIMAT0055957
• Description: Oryza sativa osa-miR169c-3p mature miRNA
• Sequence: 83 - GGCAAGUCUGUCCUUGGCUACA - 104
• Evidence: experimental ; unknown

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799