Stem-loop osa-MIR169g

Accession

MI0001122

Description

Oryza sativa osa-MIR169g precursor miRNA

Literature search

64 open access papers mention osa-MIR169g
(337 sentences)

Sequence

224267 reads, 1702.0 reads per million, 142 experiments

cugccucuggUAGCCAAGGAUGACUUGCCUAuugugcucuucugaaugaugcagugccaugaucaguguggccuggcugguucagaugagccgagauaGGCAGUCUCCUUGGCUAGCcugaguggc
..(((.((((((((((((((.((((.(((((((..((((.(((((((.(..(((.(((((.......))))))))..).))))))).))))...)))))))))))))))))))).)))..)).)))

Structure

cu   u  --   -         U    U       -gu    u       g ug   u     ga 
  gcc cu  ggU AGCCAAGGA GACU GCCUAuu   gcuc ucugaau a  cag gccau  u
  ||| ||  ||| ||||||||| |||| |||||||   |||| ||||||| |  ||| |||||  c
  cgg ga  cCG UCGGUUCCU CUGA CGGauag   cgag agacuug u  guc cggug  a
--   u  gu   A         -    -       agc    u       g cg   -     ug 

Annotation confidence High

Comments

This sequence is a predicted paralogue of the previously identified miR169 family [1]. It is predicted to target mRNAs coding for the CCAAT Binding Factor (CBF) and HAP2-like transcription factors.

Genome context

4: 19420077-19420202 [+]

Mature osa-miR169g-5p

• Accession: MIMAT0001052
• Description: Oryza sativa osa-miR169g-5p mature miRNA
• Sequence: 11 - UAGCCAAGGAUGACUUGCCUA - 31
• Evidence: not_experimental

Mature osa-miR169g-3p

• Accession: MIMAT0055959
• Description: Oryza sativa osa-miR169g-3p mature miRNA
• Sequence: 99 - GGCAGUCUCCUUGGCUAGC - 117
• Evidence: experimental ; unknown

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799