Stem-loop osa-MIR169k

Accession

MI0001126

Description

Oryza sativa osa-MIR169k precursor miRNA

Literature search

61 open access papers mention osa-MIR169k
(307 sentences)

Sequence

1442 reads, 1016 reads per million, 2 experiments

ucugucuagaUAGCCAAGGAUGACUUGCCUGuggccucuuggagagagagguguagcuuaauuagcagcaugguuugagcauugcuugaucgguugaucgcuucgcuugcucugcaugagaucuuacaggcagucuccuuggcuagucugggcggc
.(((((((((((((((((((.((((.((((((((.(((.((.((((..(((((.(((...((((((((((..((....))..))))......)))))).))).))))).)))).)).)))...))))))))))))))))))))).)))))))))).

Structure

u          -         U    U        --c   u  g    ag     u   uua      ------    ug  u 
 cugucuagaU AGCCAAGGA GACU GCCUGugg   cuc ug agag  aggug agc   auuagc      agca  gu u
 |||||||||| ||||||||| |||| ||||||||   ||| || ||||  ||||| |||   ||||||      ||||  ||  
 ggcgggucug ucgguuccu cuga cggacauu   gag ac ucuc  uucgc ucg   uaguug      ucgu  cg g
c          a         -    -        cua   u  g    -g     u   --c      gcuagu    ua  a 

Annotation confidence Not enough data

Comments

This sequence is a predicted paralogue of the previously identified miR169 family [1]. It is predicted to target mRNAs coding for the CCAAT Binding Factor (CBF) and HAP2-like transcription factors.

Genome context

Chr9: 19792133-19792288 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from osa-MIR169k

Mature osa-miR169k

• Accession: MIMAT0001056
• Description: Oryza sativa osa-miR169k mature miRNA
• Sequence: 11 - UAGCCAAGGAUGACUUGCCUG - 31
• Evidence: not_experimental

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799