Stem-loop osa-MIR169m

Accession

MI0001128

Description

Oryza sativa osa-MIR169m precursor miRNA

Literature search

61 open access papers mention osa-MIR169m
(314 sentences)

Sequence

278800 reads, 2039.0 reads per million, 142 experiments

ugaguccuggUAGCCAAGGAUGACUUGCCUGUauauuuauauauauaugugugugugaucaauggauggauugaucaagcugcuugcaggcucaugcauauauauguacaGGCAGUCUCCUUGGCUAGCCcggcuacc
..((.((.((((((((((((.((((.((((((((......(((((((((((((..((((((((......))))))))((((.......)))))))))))))))))))))))))))))))))))))).))).))))...

Structure

-ug  u  u   -         U    U        auuuau             -------------ug        gg 
   ag cc ggU AGCCAAGGA GACU GCCUGUau      auauauaugugug               ugaucaau  a
   || || ||| ||||||||| |||| ||||||||      |||||||||||||               ||||||||   
   uc gg CCG UCGGUUCCU CUGA CGGacaug      uauauauacguac               acuaguua  u
cca  -  c   A         -    -        ------             ucggacguucgucga        gg 

Annotation confidence High

Comments

This sequence is a predicted paralogue of the previously identified miR169 family [1]. It is predicted to target mRNAs coding for the CCAAT Binding Factor (CBF) and HAP2-like transcription factors.

Genome context

8: 26813897-26814034 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from osa-MIR169m

Mature osa-miR169m-5p

• Accession: MIMAT0001058
• Description: Oryza sativa osa-miR169m-5p mature miRNA
• Sequence: 11 - UAGCCAAGGAUGACUUGCCUGU - 32
• Evidence: not_experimental

Mature osa-miR169m-3p

• Accession: MIMAT0055964
• Description: Oryza sativa osa-miR169m-3p mature miRNA
• Sequence: 111 - GGCAGUCUCCUUGGCUAGCC - 130
• Evidence: experimental ; unknown

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799