Stem-loop osa-MIR169o

Accession

MI0001130

Description

Oryza sativa osa-MIR169o precursor miRNA

Literature search

60 open access papers mention osa-MIR169o
(333 sentences)

Sequence

151039 reads, 305.0 reads per million, 136 experiments

cucccuuuggUAGCCAAGAAUGACUUGCCUAcgcuuuugcccucuguuggcucauccauccgucuaucuaucugccauggcagauggcagauuaaggguuucugaaagaaauucuugugauaggaugugcaaugaggcugcaugGGCCGGUCUUCUUGGCUAGCCagaguggc
..((((((((((((((((((.((((.(((((.((......((((.((((.(.((((((((.........(((((((((.....)))))))))(((((((((((...))))))))))).))).))))).)))))))))..)).))))).))))))))))))).))))))).)).

Structure

cu  -       -         U    U     c  uuuugc    u    g u     -   cgucuaucuaucugccauggcagauggcagau           g 
  cc cuuuggU AGCCAAGAA GACU GCCUA gc      ccuc guug c caucc auc                                uaaggguuucu  
  || ||||||| ||||||||| |||| ||||| ||      |||| |||| | ||||| |||                                ||||||||||| a
  gg gagaCCG UCGGUUCUU CUGG CGGgu cg      ggag uaac g guagg uag                                guucuuaaaga  
-c  u       A         -    C     a  ----uc    -    - u     a   -------------------------------u           a 

Annotation confidence High

Comments

This sequence is a predicted paralogue of the previously identified miR169 family [1]. It is predicted to target mRNAs coding for the CCAAT Binding Factor (CBF) and HAP2-like transcription factors.

Genome context

11: 6081528-6081700 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from osa-MIR169o

Mature osa-miR169o-5p

• Accession: MIMAT0001060
• Description: Oryza sativa osa-miR169o-5p mature miRNA
• Sequence: 11 - UAGCCAAGAAUGACUUGCCUA - 31
• Evidence: not_experimental

Mature osa-miR169o-3p

• Accession: MIMAT0055966
• Description: Oryza sativa osa-miR169o-3p mature miRNA
• Sequence: 145 - GGCCGGUCUUCUUGGCUAGCC - 165
• Evidence: experimental ; unknown

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799