Stem-loop osa-MIR169p

Accession

MI0001131

Description

Oryza sativa osa-MIR169p precursor miRNA

Literature search

60 open access papers mention osa-MIR169p
(307 sentences)

Sequence

4745 reads, 0 reads per million, 2 experiments

gagcaaggugUAGCCAAGGACAAACUUGCCGGaucaacagagaaggacugccagucuccggccaauuaauuaaccucgccgucggccaucgccggccggcaagucauccuuggcugcauccugcuc
(((((.((((((((((((((...(((((((((.......((((.((....))..))))((((...............))))(((((....))))))))))))))..)))))))))))))).)))))

Structure

     a              CAA         ------------------------------aucaaca    -a  a 
gagca ggugUAGCCAAGGA   ACUUGCCGG                                     gaga  gg c
||||| ||||||||||||||   |||||||||                                     ||||  ||  
cucgu cuacgucgguuccu   ugaacggcc                                     cucu  cc u
     c              -ac         ggccgcuaccggcugccgcuccaauuaauuaaccggc    ga  g 

Annotation confidence Not enough data

Comments

This sequence is a predicted paralogue of the previously identified miR169 family [1]. It is predicted to target mRNAs coding for the CCAAT Binding Factor (CBF) and HAP2-like transcription factors.

Genome context

Chr8: 7641327-7641452 [-]

Mature osa-miR169p

• Accession: MIMAT0001061
• Description: Oryza sativa osa-miR169p mature miRNA
• Sequence: 11 - UAGCCAAGGACAAACUUGCCGG - 32
• Evidence: not_experimental

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799