Stem-loop osa-MIR169q

Accession

MI0001132

Description

Oryza sativa osa-MIR169q precursor miRNA

Literature search

60 open access papers mention osa-MIR169q
(312 sentences)

Sequence

54608 reads, 927.0 reads per million, 51 experiments

ccacucaggcUAGCCAAGGAGACUGCCCAUGaaccagcuuaaaggaucauuaaauugcuaauccuucagggaggacacaGGCAAGUCAUCCUUGGCUAucagagauaa
...(((.((.(((((((((((((((((..((..((..(((.((((((((......))...)))))).)))..)).))..))).)))).)))))))))))).)))....

Structure

-cca   a  c          -    -   CA  aa  ag   a      ---  uu 
    cuc gg UAGCCAAGGA GACU GCC  UG  cc  cuu aaggau   ca  a
    ||| || |||||||||| |||| |||  ||  ||  ||| ||||||   ||   
    gag cu AUCGGUUCCU CUGA CGG  ac  gg  gga uuccua   gu  a
aaua   a  -          A    A   ac  -a  ag   c      auc  ua 

Annotation confidence High

Comments

This sequence is a predicted paralogue of the previously identified miR169 family [1]. It is predicted to target mRNAs coding for the CCAAT Binding Factor (CBF) and HAP2-like transcription factors.

Genome context

8: 26817488-26817595 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from osa-MIR169q

Mature osa-miR169q-5p

• Accession: MIMAT0001062
• Description: Oryza sativa osa-miR169q-5p mature miRNA
• Sequence: 11 - UAGCCAAGGAGACUGCCCAUG - 31
• Evidence: not_experimental

Mature osa-miR169q-3p

• Accession: MIMAT0055968
• Description: Oryza sativa osa-miR169q-3p mature miRNA
• Sequence: 80 - GGCAAGUCAUCCUUGGCUA - 98
• Evidence: experimental ; unknown

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799