miRBase entry: osa-MIR169q

Stem-loop osa-MIR169q


Accession
MI0001132
Description
Oryza sativa osa-MIR169q precursor miRNA
Gene family
MIPF0000323; MIR169_4

Literature search
60 open access papers mention osa-MIR169q
(310 sentences)

Sequence

reads, None reads per million, experiments
ccacucaggcUAGCCAAGGAGACUGCCCAUGaaccagcuuaaaggaucauuaaauugcuaauccuucagggaggacacaggcaagucauccuuggcuaucagagauaa
...(((.((.(((((((((((((((((..((..((..(((.((((((((......))...)))))).)))..)).))..))).)))).)))))))))))).)))....

Structure
-cca   a  c          -    -   CA  aa  ag   a      ---  uu 
    cuc gg UAGCCAAGGA GACU GCC  UG  cc  cuu aaggau   ca  a
    ||| || |||||||||| |||| |||  ||  ||  ||| ||||||   ||   
    gag cu aucgguuccu cuga cgg  ac  gg  gga uuccua   gu  a
aaua   a  -          a    a   ac  -a  ag   c      auc  ua 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
This sequence is a predicted paralogue of the previously identified miR169 family [1]. It is predicted to target mRNAs coding for the CCAAT Binding Factor (CBF) and HAP2-like transcription factors.

Genome context
Chr8: 26817488-26817595 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from osa-MIR169q
Name Accession Chromosome Start End Strand Confidence




Database links

Mature osa-miR169q

Accession MIMAT0001062
Description Oryza sativa osa-miR169q mature miRNA
Sequence 11 - UAGCCAAGGAGACUGCCCAUG - 31
Evidence not_experimental

References

  1. PubMed ID: 15200956
    Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
    "Jones-Rhoades MW, Bartel DP"
    "Mol Cell (2004) 14:787-799