Stem-loop osa-MIR172a

Accession

MI0001139

Description

Oryza sativa osa-MIR172a precursor miRNA

Literature search

78 open access papers mention osa-MIR172a
(507 sentences)

Sequence

5010 reads, 3475 reads per million, 2 experiments

guguuugcgggcguggcaucaucaagauucacauccaugcauauaucacaagacgcacauauacauccgauuuggcugAGAAUCUUGAUGAUGCUGCAUccgcagacaa
.((((((((((.((((((((((((((((((.((.((((((..............)))...............))).)).)))))))))))))))))).)))))))))).

Structure

g          c                  a  u   ---------------   auauau 
 uguuugcggg guggcaucaucaagauuc ca cca               ugc      c
 |||||||||| |||||||||||||||||| || |||               |||       
 acagacgccU CGUCGUAGUAGUUCUAAG gu ggu               acg      a
a          A                  A  c   uuagccuacauauac   cagaac 

Annotation confidence Not enough data

Comments

This sequence is a predicted paralogue of the previously identified miR172 family [1]. It is predicted to target mRNAs coding for APETALA2-like transcription factors.

Genome context

Chr9: 22881834-22881942 [+]

Mature osa-miR172a

• Accession: MIMAT0001069
• Description: Oryza sativa osa-miR172a mature miRNA
• Sequence: 79 - AGAAUCUUGAUGAUGCUGCAU - 99
• Evidence: not_experimental

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799