Stem-loop osa-MIR172a

Accession

MI0001139

Description

Oryza sativa osa-MIR172a precursor miRNA

Literature search

90 open access papers mention osa-MIR172a
(514 sentences)

Sequence

273015 reads, 823.0 reads per million, 136 experiments

guguuugcgggcGUGGCAUCAUCAAGAUUCACAuccaugcauauaucacaagacgcacauauacauccgauuuggcugAGAAUCUUGAUGAUGCUGCAUccgcagacaa
.((((((((((.((((((((((((((((((.((.((((((..............)))...............))).)).)))))))))))))))))).)))))))))).

Structure

g          c                  A  u   ---------------   auauau 
 uguuugcggg GUGGCAUCAUCAAGAUUC CA cca               ugc      c
 |||||||||| |||||||||||||||||| || |||               |||       
 acagacgccU CGUCGUAGUAGUUCUAAG gu ggu               acg      a
a          A                  A  c   uuagccuacauauac   cagaac 

Annotation confidence High

Comments

This sequence is a predicted paralogue of the previously identified miR172 family [1]. It is predicted to target mRNAs coding for APETALA2-like transcription factors.

Genome context

9: 22881834-22881942 [+]

Mature osa-miR172a-5p

• Accession: MIMAT0055971
• Description: Oryza sativa osa-miR172a-5p mature miRNA
• Sequence: 13 - GUGGCAUCAUCAAGAUUCACA - 33
• Evidence: experimental ; unknown

Mature osa-miR172a-3p

• Accession: MIMAT0001069
• Description: Oryza sativa osa-miR172a-3p mature miRNA
• Sequence: 79 - AGAAUCUUGAUGAUGCUGCAU - 99
• Evidence: not_experimental

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799