Stem-loop osa-MIR172c

Accession

MI0001141

Description

Oryza sativa osa-MIR172c precursor miRNA

Literature search

80 open access papers mention osa-MIR172c
(463 sentences)

Sequence

3506 reads, 29.0 reads per million, 109 experiments

cuuguugcgggUGCAGCGUCAUCAAGAUUCACgugugccgcacggcacacguaucgguuuucaaguguagucaucgugcgUGAAUCUUGAUGAUGCUGCACcagcaaagag
(((.((((.((((((((((((((((((((((((((((((....)))))))(((.((((..............)))))))))))))))))))))))))))))).)))).)))

Structure

   g    g                       -----------------------------       g 
cuu uugc ggUGCAGCGUCAUCAAGAUUCAC                             gugugcc c
||| |||| |||||||||||||||||||||||                             |||||||  
gag aacg cCACGUCGUAGUAGUUCUAAGUg                             cacacgg a
   a    a                       cgugcuacugaugugaacuuuuggcuaug       c 

Annotation confidence High

Comments

This sequence is a predicted paralogue of the previously identified miR172 family [1]. It is predicted to target mRNAs coding for APETALA2-like transcription factors.

Genome context

7: 13111485-13111595 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from osa-MIR172c

Mature osa-miR172c-5p

• Accession: MIMAT0055973
• Description: Oryza sativa osa-miR172c-5p mature miRNA
• Sequence: 12 - UGCAGCGUCAUCAAGAUUCAC - 32
• Evidence: experimental ; unknown

Mature osa-miR172c-3p

• Accession: MIMAT0001071
• Description: Oryza sativa osa-miR172c-3p mature miRNA
• Sequence: 81 - UGAAUCUUGAUGAUGCUGCAC - 101
• Evidence: not_experimental

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799