Stem-loop osa-MIR393b

Accession

MI0001148

Description

Oryza sativa osa-MIR393b precursor miRNA

Literature search

51 open access papers mention osa-MIR393b
(127 sentences)

Sequence

290 reads, 216 reads per million, 2 experiments

ucggccugaggaaacuaguggaggacUCCAAAGGGAUCGCAUUGAUCUggcuagcuaucucgaucgaucgccucaucgaucgacgacgacgugcgugaucgaUCAGUGCAAUCCCUUUGGAAUuuuccucuu
................((.((((((.(((((((((((.(((((((((.(((..((..(((((.(((((((......)))))))))).))...))..).))))))))))).))))))))))).)))))).)).

Structure

ucggccugaggaaacu  u      c           C         U  - ua  -ua  -   a       cc 
                ag ggagga UCCAAAGGGAU GCAUUGAUC gg c  gc   uc ucg ucgaucg  u
                || |||||| ||||||||||| ||||||||| || |  ||   || ||| |||||||   
                uc ccuuuU AGGUUUCCCUA CGUGACUag cu g  cg   ag agc agcuagc  c
---------------u  u      A           A         -  a ug  ugc  c   -       ua 

Annotation confidence High

Genome context

Chr4: 34931876-34932007 [-]

Mature osa-miR393b-5p

• Accession: MIMAT0001078
• Description: Oryza sativa osa-miR393b-5p mature miRNA
• Sequence: 27 - UCCAAAGGGAUCGCAUUGAUCU - 48
• Evidence: experimental ; Illumina [2]

Mature osa-miR393b-3p

• Accession: MIMAT0015123
• Description: Oryza sativa osa-miR393b-3p mature miRNA
• Sequence: 103 - UCAGUGCAAUCCCUUUGGAAU - 123
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 15258262
   Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis
   "Sunkar R, Zhu JK"
   "Plant Cell (2004) 16:2001-2019


2. PubMed ID: 19903869
   Rice MicroRNA effector complexes and targets
   "Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y"
   "Plant Cell (2009) 21:3421-3435