Stem-loop gga-mir-133b

Accession

MI0001206

Description

Gallus gallus gga-mir-133b precursor miRNA

Literature search

45 open access papers mention gga-mir-133b
(173 sentences)

Sequence

30560286 reads, 13878.0 reads per million, 250 experiments

cucugcucuggcUGGUCAAACGGAACCAAGCCCgucuucuucggaggUUUGGUCCCCUUCAACCAGCUauagcaguguugaaaa
..(((((.((((((((..((.((.((((((((..(((.....))))))))))).)).))..)))))))).))))).........

Structure

-------cu     c        CA  C  A        Cg   u 
         cugcu uggcUGGU  AA GG ACCAAGCC  ucu c
         ||||| ||||||||  || || ||||||||  ||| u
         gacga aUCGACCA  UU CC UGGUUUgg  agg u
aaaaguugu     u        AC  C  C        --   c 

Annotation confidence High

Comments

This sequence is a predicted homologue of a verified miRNA from human, mouse or rat. Its expression has not been validated in chicken.

Genome context

3: 107382762-107382845 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gga-mir-133b

Mature gga-miR-133b-5p

• Accession: MIMAT0051207
• Description: Gallus gallus gga-miR-133b-5p mature miRNA
• Sequence: 13 - UGGUCAAACGGAACCAAGCCC - 33
• Evidence: not_experimental

Mature gga-miR-133b-3p

• Accession: MIMAT0001138
• Description: Gallus gallus gga-miR-133b-3p mature miRNA
• Sequence: 48 - UUUGGUCCCCUUCAACCAGCU - 68
• Evidence: not_experimental

References

1. PubMed ID: 15592404
   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
   "International Chicken Genome Sequencing Consortium"
   "Nature (2004) 432:695-716