Stem-loop gga-mir-133b

Accession

MI0001206

Description

Gallus gallus gga-mir-133b precursor miRNA

Literature search

22 open access papers mention gga-mir-133b
(93 sentences)

Sequence

1629 reads, 22 reads per million, 4 experiments

cucugcucuggcuggucaaacggaaccaagcccgucuucuucggagguUUGGUCCCCUUCAACCAGCUAuagcaguguugaaaa
..(((((.((((((((..((.((.((((((((..(((.....))))))))))).)).))..)))))))).))))).........

Structure

-------cu     c        ca  c  a        cg   u 
         cugcu uggcuggu  aa gg accaagcc  ucu c
         ||||| ||||||||  || || ||||||||  ||| u
         gacga AUCGACCA  UU CC UGGUUugg  agg u
aaaaguugu     u        AC  C  C        --   c 

Annotation confidence Low

Comments

This sequence is a predicted homologue of a verified miRNA from human, mouse or rat. Its expression has not been validated in chicken.

Genome context

chr3: 108040385-108040468 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gga-mir-133b

Mature gga-miR-133b

• Accession: MIMAT0001138
• Description: Gallus gallus gga-miR-133b mature miRNA
• Sequence: 49 - UUGGUCCCCUUCAACCAGCUA - 69
• Evidence: not_experimental

References

1. PubMed ID: 15592404
   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
   "International Chicken Genome Sequencing Consortium"
   "Nature (2004) 432:695-716