Stem-loop gga-mir-137

Accession

MI0001221

Description

Gallus gallus gga-mir-137 precursor miRNA mir-137

Gene
family

RF00694; mir-137

Literature search

5 open access papers mention gga-mir-137
(18 sentences)

Sequence

82046 reads, 888 reads per million, 5 experiments

ucugacucucuucggugACGGGUAUUCUUGGGUGGAUAAUAcggauuacguuguUAUUGCUUAAGAAUACGCGUAGucgaggagaguaccggcggc
.((((((((((((((..(((.(((((((((((((.((((((((.....)).))))))))))))))))))).)))..)))))))))))..)))....

Structure

---u   --           ug   G             G      -  g 
    cug  acucucuucgg  ACG GUAUUCUUGGGUG AUAAUA cg a
    |||  |||||||||||  ||| ||||||||||||| |||||| || u
    ggc  ugagaggagcu  UGC CAUAAGAAUUCGU UAUugu gc u
cggc   ca           GA   G             -      u  a 

Annotation confidence High

Comments

This sequence is a predicted homologue of a verified miRNA from human, mouse or rat. Its expression has not been validated in chicken.

Genome context

chr8: 12517007-12517102 [+]

Mature gga-miR-137-3p

• Accession: MIMAT0001153
• Description: Gallus gallus gga-miR-137-3p mature miRNA
• Sequence: 55 - UAUUGCUUAAGAAUACGCGUAG - 76
• Evidence: experimental ; Illumina [2]

Mature gga-miR-137-5p

• Accession: MIMAT0026523
• Description: Gallus gallus gga-miR-137-5p mature miRNA
• Sequence: 18 - ACGGGUAUUCUUGGGUGGAUAAUA - 41
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 15592404
   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
   "International Chicken Genome Sequencing Consortium"
   "Nature (2004) 432:695-716


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45