Stem-loop gga-mir-137a

Accession

MI0001221

Description

Gallus gallus gga-mir-137a precursor miRNA mir-137

Gene
family

RF00694; mir-137

Literature search

26 open access papers mention gga-mir-137a
(132 sentences)

Sequence

174993 reads, 104.0 reads per million, 201 experiments

ucugacucucuucggugACGGGUAUUCUUGGGUGGAUAAUAcggauuacguuguUAUUGCUUAAGAAUACGCGUAGucgaggagaguaccggcggc
.((((((((((((((..(((.(((((((((((((.((((((((.....)).))))))))))))))))))).)))..)))))))))))..)))....

Structure

---u   --           ug   G             G      -  g 
    cug  acucucuucgg  ACG GUAUUCUUGGGUG AUAAUA cg a
    |||  |||||||||||  ||| ||||||||||||| |||||| || u
    ggc  ugagaggagcu  UGC CAUAAGAAUUCGU UAUugu gc u
cggc   ca           GA   G             -      u  a 

Annotation confidence High

Comments

This sequence is a predicted homologue of a verified miRNA from human, mouse or rat. Its expression has not been validated in chicken.

Genome context

8: 12257755-12257850 [+]

Mature gga-miR-137a-5p

• Accession: MIMAT0026523
• Description: Gallus gallus gga-miR-137a-5p mature miRNA
• Sequence: 18 - ACGGGUAUUCUUGGGUGGAUAAUA - 41
• Evidence: experimental ; Illumina [2]

Mature gga-miR-137a-3p

• Accession: MIMAT0001153
• Description: Gallus gallus gga-miR-137a-3p mature miRNA
• Sequence: 55 - UAUUGCUUAAGAAUACGCGUAG - 76
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 15592404
   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
   "International Chicken Genome Sequencing Consortium"
   "Nature (2004) 432:695-716


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45