Stem-loop gga-mir-183

Accession

MI0001278

Description

Gallus gallus gga-mir-183 precursor miRNA

Literature search

28 open access papers mention gga-mir-183
(221 sentences)

Sequence

166548 reads, 138.0 reads per million, 213 experiments

acuccuguucugugUAUGGCACUGGUAGAAUUCACUGugcaaccccgcggucagUGAAUUACCAUAGGGCCAUAAacagagcagagaaagacccgcga
..(((((((((((.((((((..(((((..(((((((((((......)))..)))))))))))))....)))))).))))))))).))...........

Structure

---------ac  -         g      --AC     GA        --   aa 
           uc cuguucugu UAUGGC    UGGUA  AUUCACUG  ugc  c
           || ||||||||| ||||||    |||||  ||||||||  |||   
           ag gacgagaca AUACCG    ACCAU  UAAGUgac  gcg  c
agcgcccagaa  a         A      GGAU     --        ug   cc 

Annotation confidence High

Comments

This sequence is a predicted homologue of a verified miRNA from human, mouse or rat. Its expression has not been validated in chicken.

Genome context

1: 1382053-1382150 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from gga-mir-183

Mature gga-miR-183-5p

• Accession: MIMAT0001191
• Description: Gallus gallus gga-miR-183-5p mature miRNA
• Sequence: 15 - UAUGGCACUGGUAGAAUUCACUG - 37
• Evidence: not_experimental

Mature gga-miR-183-3p

• Accession: MIMAT0051215
• Description: Gallus gallus gga-miR-183-3p mature miRNA
• Sequence: 55 - UGAAUUACCAUAGGGCCAUAA - 75
• Evidence: not_experimental

References

1. PubMed ID: 15592404
   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
   "International Chicken Genome Sequencing Consortium"
   "Nature (2004) 432:695-716