miRBase entry: dre-mir-181a-1

Stem-loop dre-mir-181a-1


Accession
MI0001380
Description
Danio rerio dre-mir-181a-1 precursor miRNA

Literature search
18 open access papers mention dre-mir-181a-1
(68 sentences)

Sequence

782913 reads, 51345 reads per million, 11 experiments
guuugccucagugAACAUUCAACGCUGUCGGUGAGUuugagcuaaauggaaaaaaACCAUCGACCGUUGAUUGUACCcugcggc
....(((.(((.(.(((.((((((..(((((((.((((...((....))....))))))))))))))))).))).).))).)))

Structure
guuu   u   u A   U      CU       A    -gag  a 
    gcc cag g ACA UCAACG  GUCGGUG GUuu    cu a
    ||| ||| | ||| ||||||  ||||||| ||||    ||  
    cgg guc C UGU AGUUGC  CAGCUAC CAaa    gg a
----   c   C A   U      --       -    aaaa  u 


Annotation confidence High
Do you think this miRNA is real?

Genome context
chr22: 22826004-22826087 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from dre-mir-181a-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dre-miR-181a-5p

Accession MIMAT0001623
Description Danio rerio dre-miR-181a-5p mature miRNA
Sequence 14 - AACAUUCAACGCUGUCGGUGAGU - 36
Evidence not_experimental

Mature dre-miR-181a-3p

Accession MIMAT0001282
Description Danio rerio dre-miR-181a-3p mature miRNA
Sequence 56 - ACCAUCGACCGUUGAUUGUACC - 77
Evidence experimental
cloned [1]
Database links

References

  1. PubMed ID: 12624257
    Vertebrate microRNA genes
    "Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP"
    "Science (2003) 299:1540