Stem-loop cbr-mir-231

Accession

MI0001394

Description

Caenorhabditis briggsae cbr-mir-231 precursor miRNA

Sequence

cuagcaccucaauguuguucugucuguuuccauagcuuauauuguaagguacuuaUAAGCUCGUGAACAACAGGCAGGAcaacuggaagugguguuuuuuuuca
..((((((.....(((((((((((((((..(((((((((((..(((...))).)))))))).)))...))))))))))))))).......))))))........

Structure

------cu      --ucaau               -uc   -        uu   a 
        agcacc       guuguucugucuguu   cau agcuuaua  gua  
        ||||||       |||||||||||||||   ||| ||||||||  ||| g
        uugugg       caacAGGACGGACAA   GUG UCGAAUau  cau  
acuuuuuu      ugaaggu               CAA   C        -u   g 

Annotation confidence Low

Comments

This miRNA is the predicted homologue of a verified C. elegans miRNA [1]. Its expression has not been verified in C. briggsae. The mature sequence differs from the elegans sequence at 2 positions.

Genome context

chrIII: 11907626-11907729 [+]

Mature cbr-miR-231

• Accession: MIMAT0001293
• Description: Caenorhabditis briggsae cbr-miR-231 mature miRNA
• Sequence: 56 - UAAGCUCGUGAACAACAGGCAGGA - 79
• Evidence: not_experimental

References

1. PubMed ID: 12672692
   The microRNAs of Caenorhabditis elegans
   "Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP"
   "Genes Dev (2003) 17:991-1008