miRBase entry: cbr-mir-55

Stem-loop cbr-mir-55


Accession
MI0001412
Description
Caenorhabditis briggsae cbr-mir-55 precursor miRNA
Gene family
MIPF0000270; mir-55


Sequence

aaaauugaaucgucacaaagggggacucggcggaaaauauggugguauacuacacagugaauagauaUACCCGUAUAUUUUUCUGCCGAGccccuccacgacaucaauaagg
...(((((...(((.....(((((.((((((((((((((((..(((((((((.........))).))))))..)))).)))))))))))))))))....))).)))))....

Structure
-aaa     auc   acaaa     a            -    gu      -   cac 
    auuga   guc     ggggg cucggcggaaaa uaug  gguaua cua   a
    |||||   |||     ||||| |||||||||||| ||||  |||||| |||   g
    uaacu   cag     ucccc GAGCCGUCUUUU AUAU  CCAUau gau   u
ggaa     --a   -cacc     -            U    GC      a   aag 


Annotation confidence Not enough data
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Comments
This miRNA is the predicted homologue of a verified C. elegans miRNA [1]. Its expression has not been verified in C. briggsae. The mature sequence differs from the elegans sequence at 3 positions.

Genome context
chrX: 16963456-16963567 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from cbr-mir-55
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cbr-miR-55

Accession MIMAT0001310
Description Caenorhabditis briggsae cbr-miR-55 mature miRNA
Sequence 68 - UACCCGUAUAUUUUUCUGCCGAG - 90
Evidence not_experimental

References

  1. PubMed ID: 12672692
    The microRNAs of Caenorhabditis elegans
    "Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP"
    "Genes Dev (2003) 17:991-1008