Stem-loop sbi-MIR395a

Accession

MI0001534

Description

Sorghum bicolor sbi-MIR395a precursor miRNA

Gene family

MIPF0000016; MIR395

Literature search

4 open access papers mention sbi-MIR395a
(30 sentences)

Sequence

gguugguugguugucaccuggaguucuccacaaacuacuucaguagcaacacacaccccuaguuuaaugcaccguguuugcauguuuguguggagcuguguguguacauaGUGAAGUGUUUGGGGGAACUCuggguggcaaucagcaauu
.....((((((((((((((((((((((((.(((((.((((((.((...((((((((....(((((.(((((.((((....))))..))))).)))))))))))))...)).)))))))))))))))))))))))))))))))))))....

Structure

gguug                        a     u      g  gca        cccu     a     -c    u 
     guugguugucaccuggaguucucc caaac acuuca ua   acacacac    aguuu augca  cgug u
     |||||||||||||||||||||||| ||||| |||||| ||   ||||||||    ||||| |||||  ||||  
     cgacuaacgguggguCUCAAGGGG GUUUG UGAAGU au   ugugugug    ucgag ugugu  guac u
-uuaa                        -     -      G  aca        ----     g     uu    g 

Annotation confidence Not enough data

Genome context

chr6: 57783551-57783700 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from sbi-MIR395a

Mature sbi-miR395a

• Accession: MIMAT0001430
• Description: Sorghum bicolor sbi-miR395a mature miRNA
• Sequence: 111 - GUGAAGUGUUUGGGGGAACUC - 131
• Evidence: not_experimental

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13