Stem-loop rno-mir-431

Accession

MI0001722

Description

Rattus norvegicus rno-mir-431 precursor miRNA

Literature search

6 open access papers mention rno-mir-431
(9 sentences)

Sequence

160450 reads, 138 reads per million, 401 experiments

uccugcgcguccugcgaggUGUCUUGCAGGCCGUCAUGCAggccacacugacgguaacguugcaggucgucuugcagggcuucucgcaagacgacaucuucaucgccaacgacg
....(((((((.(((((((.((((((((((.((.(.((((((((........)))....))))).).)).)))))))))).))))))).))))..........)))........

Structure

----uccu   ----------    c       U          C  U A     ----   aca 
        gcg          cguc ugcgagg GUCUUGCAGG CG C UGCAg    gcc   c
        |||          |||| ||||||| |||||||||| || | |||||    |||    
        cgc          gcag acgcucu cgggacguuc gc g acguu    ugg   u
gcagcaac   uacuucuaca    a       u          u  u g     gcaa   cag 

Annotation confidence Low

Genome context

chr6: 133711425-133711538 [+]

Clustered miRNAs

11 other miRNAs are < 10 kb from rno-mir-431

Mature rno-miR-431

• Accession: MIMAT0001626
• Description: Rattus norvegicus rno-miR-431 mature miRNA
• Sequence: 20 - UGUCUUGCAGGCCGUCAUGCA - 40
• Evidence: experimental ; cloned [2], SOLiD [3]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 15891114
   Clustering and conservation patterns of human microRNAs
   "Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A, Brownstein MJ, Tuschl T, Margalit H"
   "Nucleic Acids Res (2005) 33:2697-2706


3. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249