miRBase entry: dre-let-7a-4

Stem-loop dre-let-7a-4

Accession

MI0001861

Description

Danio rerio dre-let-7a-4 precursor miRNA

Literature search

43 open access papers mention dre-let-7a-4
(334 sentences)

Sequence

194949 reads, 13778 reads per million, 11 experiments

gcgaugucucgggaUGAGGUAGUAGGUUGUAUAGUUuagaguuacaacacgggagauaacuguacagccuccuagcuuuccucgagcagacgc
(((.((.(((((((.(((.(((.(((((((((((((.....................))))))))))))).))).)))))).))))))..)))

Structure

   -a  u    -   U   G   U             uagaguuac 
gcg  ug cucg gga GAG UAG AGGUUGUAUAGUU         a
|||  || |||| ||| ||| ||| |||||||||||||         a
cgc  ac gagc ccu uuc auc uccgacaugucaa         c
   ag  -    u   -   g   c             uagagggca

Annotation confidence Not enough data

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Genome context

chr5: 29990452-29990544 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from dre-let-7a-4

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dre-let-7a

Accession	MIMAT0001759
Description	Danio rerio dre-let-7a mature miRNA
Sequence	15 - UGAGGUAGUAGGUUGUAUAGUU - 36
Evidence	experimental cloned [1]
Database links
Predicted targets

References

PubMed ID: 15937218
The developmental miRNA profiles of zebrafish as determined by small RNA cloning
"Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
"Genes Dev (2005) 19:1288-1293