miRBase entry: dre-let-7c-2

Stem-loop dre-let-7c-2

Accession

MI0001867

Description

Danio rerio dre-let-7c-2 precursor miRNA

Gene family

MIPF0000002; let-7

Literature search

40 open access papers mention dre-let-7c-2
(215 sentences)

Sequence

11801 reads, 903 reads per million, 11 experiments

gugugcauccaggcUGAGGUAGUAGGUUGUAUGGUUucgaaugacaccaugggaguuaaCUGUACAACCUUCUAGCUUUCCuuggaguacac
((((((.((((((..(((.(((.(((((((((((((((..(((....)))..))...))))))))))))).))).)))..))))))))))))

Structure

      a      cU   G   U             ---  ga   a 
gugugc uccagg  GAG UAG AGGUUGUAUGGUU   uc  aug c
|||||| ||||||  ||| ||| |||||||||||||   ||  |||  
cacaug agguuC  UUC AUC UCCAACAUGUCaa   ag  uac a
      -      CU   G   U             uug  gg   c

Annotation confidence High

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Genome context

chr10: 38072077-38072168 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from dre-let-7c-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dre-let-7c-5p

Accession	MIMAT0001761
Description	Danio rerio dre-let-7c-5p mature miRNA
Sequence	15 - UGAGGUAGUAGGUUGUAUGGUU - 36
Evidence	experimental cloned [1]
Database links
Predicted targets

Mature dre-let-7c-3p

Accession	MIMAT0031930
Description	Danio rerio dre-let-7c-3p mature miRNA
Sequence	60 - CUGUACAACCUUCUAGCUUUCC - 81
Evidence	not_experimental

References

PubMed ID: 15937218
The developmental miRNA profiles of zebrafish as determined by small RNA cloning
"Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
"Genes Dev (2005) 19:1288-1293