Stem-loop dre-let-7d-1

Accession

MI0001868

Description

Danio rerio dre-let-7d-1 precursor miRNA

Literature search

42 open access papers mention dre-let-7d-1
(301 sentences)

Sequence

5587 reads, 484 reads per million, 11 experiments

ugugcguugcggugUGAGGUAGUUGGUUGUAUGGUUuugcauaauaaacagcccggaguuaaCUGUACAACCUUCUAGCUUUCCcugcggcugcacg
.(((((((((((.(.(((.(((..((((((((((((..((.................)).))))))))))))..))).))).).))))))).)))).

Structure

u    -       u U   G   UU            uu  auaauaa 
 gugc guugcgg g GAG UAG  GGUUGUAUGGUU  gc       a
 |||| ||||||| | ||| |||  ||||||||||||  ||       c
 cacg cggcguc C UUC AUC  CCAACAUGUCaa  ug       a
g    u       C U   G   UU            -u  aggcccg 

Annotation confidence High

Genome context

chr16: 24881122-24881218 [+]

Mature dre-let-7d-5p

• Accession: MIMAT0001762
• Description: Danio rerio dre-let-7d-5p mature miRNA
• Sequence: 15 - UGAGGUAGUUGGUUGUAUGGUU - 36
• Evidence: experimental ; cloned [1]

Mature dre-let-7d-3p

• Accession: MIMAT0031931
• Description: Danio rerio dre-let-7d-3p mature miRNA
• Sequence: 63 - CUGUACAACCUUCUAGCUUUCC - 84
• Evidence: not_experimental

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293