Stem-loop dre-mir-9-5

Accession

MI0001884

Description

Danio rerio dre-mir-9-5 precursor miRNA

Gene family

MIPF0000014; mir-9

Literature search

22 open access papers mention dre-mir-9-5
(217 sentences)

Sequence

41400 reads, 2173 reads per million, 11 experiments

ggaagcgaguuguuaUCUUUGGUUAUCUAGCUGUAUGAguauuuugcacuucaUAAAGCUAGAUAACCGAAAGUaaaaacugccucc
(((.((.((((.((((.(((((((((((((((.(((((((.......)).))))).))))))))))))))).)))).)))))).)))

Structure

   a  g    g    C               G     -  au 
gga gc aguu uuaU UUUGGUUAUCUAGCU UAUGA gu  u
||| || |||| |||| ||||||||||||||| ||||| ||  u
ccu cg ucaa aaUG AAGCCAAUAGAUCGA AUacu ca  u
   c  -    a    A               A     u  cg 

Annotation confidence High

Genome context

chr5: 48170098-48170184 [-]

Mature dre-miR-9-5p

• Accession: MIMAT0001769
• Description: Danio rerio dre-miR-9-5p mature miRNA
• Sequence: 16 - UCUUUGGUUAUCUAGCUGUAUGA - 38
• Evidence: experimental ; cloned [1]

Mature dre-miR-9-3p

• Accession: MIMAT0003156
• Description: Danio rerio dre-miR-9-3p mature miRNA
• Sequence: 54 - UAAAGCUAGAUAACCGAAAGU - 74
• Evidence: experimental ; array [2], in-situ [2]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293


2. PubMed ID: 15919954
   MicroRNA expression in zebrafish embryonic development
   "Wienholds E, Kloosterman WP, Miska E, Alvarez-Saavedra E, Berezikov E, de Bruijn E, Horvitz HR, Kauppinen S, Plasterk RH"
   "Science (2005) 309:310-311