Stem-loop dre-mir-10c

Accession

MI0001888

Description

Danio rerio dre-mir-10c precursor miRNA

Literature search

10 open access papers mention dre-mir-10c
(197 sentences)

Sequence

23501706 reads, 21179.0 reads per million, 270 experiments

ccugucaucuauauaUACCCUGUAGAUCCGGAUUUGUGUaaacagacgcacagucaCAAAUUCGUAUCUAGGGGAGUAuguaguugauguauagg
(((((((((..((((((((((.(((((.((((((((((................)))))))))).))))).))).)))))))...)))).)))))

Structure

     -    -ua       -   G     C          Uaaacag 
ccugu cauc   uauaUAC CCU UAGAU CGGAUUUGUG       a
||||| ||||   ||||||| ||| ||||| ||||||||||        
ggaua guag   auguAUG GGG AUCUA GCUUAAACac       c
     u    uug       A   G     U          ugacacg 

Annotation confidence High

Genome context

chr3: 23720651-23720745 [+]

Mature dre-miR-10c-5p

• Accession: MIMAT0001770
• Description: Danio rerio dre-miR-10c-5p mature miRNA
• Sequence: 16 - UACCCUGUAGAUCCGGAUUUGUGU - 39
• Evidence: experimental ; cloned [1]

Mature dre-miR-10c-3p

• Accession: MIMAT0031935
• Description: Danio rerio dre-miR-10c-3p mature miRNA
• Sequence: 57 - CAAAUUCGUAUCUAGGGGAGUA - 78
• Evidence: not_experimental

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293