Stem-loop dre-mir-10d

Accession

MI0001889

Description

Danio rerio dre-mir-10d precursor miRNA

Literature search

10 open access papers mention dre-mir-10d
(173 sentences)

Sequence

4141 reads, 149 reads per million, 11 experiments

uggaagcuuuguuccgucgucuauauaUACCCUGUAGAACCGAAUGUGUGuuuacacagcaaauucaCAGAUUCGGUUUUAGGGGAGUAuauggacgaugcaaaaacgucugcuuuca
(((((((..((((.((((((((((((((.((((.(((((((((((.((((...............)))).))))))))))))))).))))))))))))))....))))...)))))))

Structure

       -uu    ---c              A    G           G    uuuaca 
uggaagc   uguu    cgucgucuauauaU CCCU UAGAACCGAAU UGUG      c
|||||||   ||||    |||||||||||||| |||| ||||||||||| ||||      a
acuuucg   gcaa    guagcagguauAUG GGGG AUUUUGGCUUA ACac      g
       ucu    aaac              A    -           G    uuaaac 

Annotation confidence High

Genome context

chr6: 10867024-10867141 [+]

Mature dre-miR-10d-5p

• Accession: MIMAT0001771
• Description: Danio rerio dre-miR-10d-5p mature miRNA
• Sequence: 28 - UACCCUGUAGAACCGAAUGUGUG - 50
• Evidence: experimental ; cloned [1]

Mature dre-miR-10d-3p

• Accession: MIMAT0003394
• Description: Danio rerio dre-miR-10d-3p mature miRNA
• Sequence: 68 - CAGAUUCGGUUUUAGGGGAGUA - 89
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293