Stem-loop dre-mir-15a-2

Accession

MI0001892

Description

Danio rerio dre-mir-15a-2 precursor miRNA mir-15

Gene
family

RF00455; mir-15

Literature search

11 open access papers mention dre-mir-15a-2
(26 sentences)

Sequence

729857 reads, 403.0 reads per million, 271 experiments

gccgaggcucucuaggugauggugUAGCAGCACAGAAUGGUUUGUGgugauacagagaugCAGGCCAUGAUGUGCUGCAGCAucaauuccugggaccuacgc
..(((((.((.(((((...((((((.((((((((..((((((((((............))))))))))..)))))))).))))))...)))))))))).)).

Structure

gc  -   c  u     uga      A        GA          gugau 
  cg agg uc cuagg   uggugU GCAGCACA  AUGGUUUGUG     a
  || ||| || |||||   |||||| ||||||||  ||||||||||      
  gc ucc ag ggucc   acuACG CGUCGUGU  UACCGGACgu     c
-c  a   -  -     uua      A        AG          agaga 

Annotation confidence High

Genome context

chr9: 29652511-29652612 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from dre-mir-15a-2

Mature dre-miR-15a-5p

• Accession: MIMAT0001772
• Description: Danio rerio dre-miR-15a-5p mature miRNA
• Sequence: 25 - UAGCAGCACAGAAUGGUUUGUG - 46
• Evidence: experimental ; cloned [1]

Mature dre-miR-15a-2-3p

• Accession: MIMAT0052755
• Description: Danio rerio dre-miR-15a-2-3p mature miRNA
• Sequence: 61 - CAGGCCAUGAUGUGCUGCAGCA - 82
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293