miRBase entry: dre-mir-15a-2

Stem-loop dre-mir-15a-2


Accession
MI0001892
Description
Danio rerio dre-mir-15a-2 precursor miRNA mir-15
Gene
family?
RF00455; mir-15

Literature search
11 open access papers mention dre-mir-15a-2
(25 sentences)

Sequence

1183 reads, 178 reads per million, 11 experiments
gccgaggcucucuaggugauggugUAGCAGCACAGAAUGGUUUGUGgugauacagagaugcaggccaugaugugcugcagcaucaauuccugggaccuacgc
..(((((.((.(((((...((((((.((((((((..((((((((((............))))))))))..)))))))).))))))...)))))))))).)).

Structure
gc  -   c  u     uga      A        GA          gugau 
  cg agg uc cuagg   uggugU GCAGCACA  AUGGUUUGUG     a
  || ||| || |||||   |||||| ||||||||  ||||||||||      
  gc ucc ag ggucc   acuacg cgucgugu  uaccggacgu     c
-c  a   -  -     uua      a        ag          agaga 


Annotation confidence Not enough data
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Genome context
chr9: 29652511-29652612 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from dre-mir-15a-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dre-miR-15a-5p

Accession MIMAT0001772
Description Danio rerio dre-miR-15a-5p mature miRNA
Sequence 25 - UAGCAGCACAGAAUGGUUUGUG - 46
Evidence experimental
cloned [1]
Database links
Predicted targets

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293