Stem-loop dre-mir-17a-2

Accession

MI0001898

Description

Danio rerio dre-mir-17a-2 precursor miRNA mir-17

Gene
family

RF00051; mir-17

Literature search

20 open access papers mention dre-mir-17a-2
(170 sentences)

Sequence

6972 reads, 482 reads per million, 11 experiments

gucacuguaguguCAAAGUGCUUACAGUGCAGGUAguucaauauaaucuACUGCAGUGGAGGCACUUCAAGCuuuaccgugac
(((((.((((.((..(((((((..((.(((((.(((...........)))))))).))..)))))))...)).)))).)))))

Structure

     u    u  -CA       UA  G     G   uuca 
gucac guag gu   AAGUGCU  CA UGCAG UAg    a
||||| |||| ||   |||||||  || ||||| |||    u
cagug cauu CG   UUCACGG  GU ACGUC Auc    a
     c    u  AAC       AG  G     -   uaau 

Annotation confidence High

Genome context

chr9: 53436944-53437026 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from dre-mir-17a-2

Mature dre-miR-17a-5p

• Accession: MIMAT0001777
• Description: Danio rerio dre-miR-17a-5p mature miRNA
• Sequence: 14 - CAAAGUGCUUACAGUGCAGGUA - 35
• Evidence: experimental ; cloned [1]

Mature dre-miR-17a-2-3p

• Accession: MIMAT0031938
• Description: Danio rerio dre-miR-17a-2-3p mature miRNA
• Sequence: 50 - ACUGCAGUGGAGGCACUUCAAGC - 72
• Evidence: not_experimental

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293