Stem-loop dre-mir-20a

Accession

MI0001907

Description

Danio rerio dre-mir-20a precursor miRNA mir-17

Gene
family

RF00051; mir-17

Literature search

9 open access papers mention dre-mir-20a
(14 sentences)

Sequence

73887 reads, 2679 reads per million, 11 experiments

ucuuaaauaaaucuccuaauguugcaguuguguuagaguuucagcagugcUAAAGUGCUUAUAGUGCAGGUAGuauuucugucaucuACUGCAGUGUGAGCACUUGAAGuacuucuagcuuaaugcgucugggauccgaagauuucugcuaga
(((.....((((((.(....(((.(((.((((((.(((((..((.((((((.(((((((((((.(((((.(((............)))))))).)))))))))))..)))))).))))))))))))).))).)))..).)))))).....)))

Structure

   uaaau      c uaau   g   u      a     uc  c      -A           G     G   uauuu 
ucu     aaaucu c    guu cag uguguu gaguu  ag agugcU  AAGUGCUUAUA UGCAG UAG     c
|||     |||||| |    ||| ||| |||||| |||||  || ||||||  ||||||||||| ||||| |||      
aga     uuuaga g    uag guc gcguaa uucga  uc ucauGA  UUCACGAGUGU ACGUC Auc     u
   ucguc      a --cc   g   u      -     --  u      AG           G     -   uacug 

Annotation confidence High

Genome context

chr1: 3297603-3297755 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from dre-mir-20a

Mature dre-miR-20a-5p

• Accession: MIMAT0001786
• Description: Danio rerio dre-miR-20a-5p mature miRNA
• Sequence: 51 - UAAAGUGCUUAUAGUGCAGGUAG - 73
• Evidence: experimental ; cloned [1]

Mature dre-miR-20a-3p

• Accession: MIMAT0003400
• Description: Danio rerio dre-miR-20a-3p mature miRNA
• Sequence: 88 - ACUGCAGUGUGAGCACUUGAAG - 109
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293