miRBase entry: dre-mir-23a-1

Stem-loop dre-mir-23a-1


Accession
MI0001913
Description
Danio rerio dre-mir-23a-1 precursor miRNA

Literature search
11 open access papers mention dre-mir-23a-1
(212 sentences)

Sequence

14903 reads, 2451 reads per million, 11 experiments
gcuguggcggggaggguuccuggcaccgugauuugguggauaaacagaaaugaaaAUCACAUUGCCAGGGAUUUCCAcuccugcacggu
((((((..((((.((((((((((((..(((((((..((......)).......)))))))..))))))))))..)).))))..))))))

Structure
      gc    a  --          cc       -----gg  ga 
gcugug  gggg gg  guuccuggca  gugauuu       ug  u
||||||  |||| ||  ||||||||||  |||||||       ||   
uggcac  ccuc CC  UAGGGACCGU  CACUAaa       ac  a
      gu    A  UU          UA       aguaaag  aa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr22: 5293213-5293301 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from dre-mir-23a-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dre-miR-23a-3p

Accession MIMAT0001790
Description Danio rerio dre-miR-23a-3p mature miRNA
Sequence 56 - AUCACAUUGCCAGGGAUUUCCA - 77
Evidence experimental
cloned [1]
Database links
Predicted targets

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293