miRBase entry: dre-mir-23a-1

Stem-loop dre-mir-23a-1

Accession

MI0001913

Description

Danio rerio dre-mir-23a-1 precursor miRNA

Gene family

MIPF0000027; mir-23

Literature search

11 open access papers mention dre-mir-23a-1
(212 sentences)

Sequence

14903 reads, 2451 reads per million, 11 experiments

gcuguggcggggaggguuccuggcaccgugauuugguggauaaacagaaaugaaaAUCACAUUGCCAGGGAUUUCCAcuccugcacggu
((((((..((((.((((((((((((..(((((((..((......)).......)))))))..))))))))))..)).))))..))))))

Structure

      gc    a  --          cc       -----gg  ga 
gcugug  gggg gg  guuccuggca  gugauuu       ug  u
||||||  |||| ||  ||||||||||  |||||||       ||   
uggcac  ccuc CC  UAGGGACCGU  CACUAaa       ac  a
      gu    A  UU          UA       aguaaag  aa

Annotation confidence Not enough data

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Genome context

chr22: 5293213-5293301 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from dre-mir-23a-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dre-miR-23a-3p

Accession	MIMAT0001790
Description	Danio rerio dre-miR-23a-3p mature miRNA
Sequence	56 - AUCACAUUGCCAGGGAUUUCCA - 77
Evidence	experimental cloned [1]
Database links
Predicted targets

References

PubMed ID: 15937218
The developmental miRNA profiles of zebrafish as determined by small RNA cloning
"Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
"Genes Dev (2005) 19:1288-1293