miRBase entry: dre-mir-23a-3

Stem-loop dre-mir-23a-3

Accession

MI0001916

Description

Danio rerio dre-mir-23a-3 precursor miRNA

Literature search

11 open access papers mention dre-mir-23a-3
(212 sentences)

Sequence

16570 reads, 2673 reads per million, 11 experiments

ccagcuggagGGAUUCCUGGCAGAGUGAUUUgggauuauaucauaaaAUCACAUUGCCAGGGAUUUCCAaccagcugu
.(((((((.((((((((((((((.(((((((..(((...)))...))))))).))))))))))))))...))))))).

Structure

c       --a              A       -gg   u 
 cagcugg   gGGAUUCCUGGCAG GUGAUUU   gau  
 |||||||   |||||||||||||| |||||||   ||| a
 gucgacc   CUUUAGGGACCGUU CACUAaa   cua  
u       aAC              A       aua   u

Annotation confidence High

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Genome context

chr2: 33900435-33900512 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from dre-mir-23a-3

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dre-miR-23a-3p

Accession	MIMAT0001790
Description	Danio rerio dre-miR-23a-3p mature miRNA
Sequence	48 - AUCACAUUGCCAGGGAUUUCCA - 69
Evidence	experimental cloned [1]
Database links
Predicted targets

Mature dre-miR-23a-3-5p

Accession	MIMAT0031945
Description	Danio rerio dre-miR-23a-3-5p mature miRNA
Sequence	11 - GGAUUCCUGGCAGAGUGAUUU - 31
Evidence	not_experimental
Database links

References

PubMed ID: 15937218
The developmental miRNA profiles of zebrafish as determined by small RNA cloning
"Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
"Genes Dev (2005) 19:1288-1293