miRBase entry: dre-mir-24-4

Stem-loop dre-mir-24-4

Accession

MI0001918

Description

Danio rerio dre-mir-24-4 precursor miRNA mir-24

Gene
family?

RF00178; mir-24

Literature search

6 open access papers mention dre-mir-24-4
(82 sentences)

Sequence

12477 reads, 691 reads per million, 11 experiments

gagggcuguucccacuugugccugcuaaacugguaucaguauguugauuuagugcUGGCUCAGUUCAGCAGGAACAGgugugaaguccuc
(((((((..((.(((((((.((((((.((((((..(((((((.........))))))).)))))).)))))).))))))).)))))))))

Structure

       gu  c       g      a      ua       guu 
gagggcu  uc cacuugu ccugcu aacugg  ucaguau   g
|||||||  || ||||||| |||||| ||||||  |||||||   a
cuccuga  ag gugGACA GGACGA UUGACU  GGUcgug   u
       --  u       A      C      -C       auu

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

chr22: 5307485-5307574 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from dre-mir-24-4

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dre-miR-24

Accession	MIMAT0001792
Description	Danio rerio dre-miR-24 mature miRNA
Sequence	56 - UGGCUCAGUUCAGCAGGAACAG - 77
Evidence	experimental cloned [1]
Database links
Predicted targets

References

PubMed ID: 15937218
The developmental miRNA profiles of zebrafish as determined by small RNA cloning
"Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
"Genes Dev (2005) 19:1288-1293