miRBase entry: dre-mir-27d

Stem-loop dre-mir-27d

Accession

MI0001931

Description

Danio rerio dre-mir-27d precursor miRNA mir-27

Gene
family?

RF00644; mir-27

Literature search

7 open access papers mention dre-mir-27d
(20 sentences)

Sequence

3221 reads, 285 reads per million, 11 experiments

uucugagcgggugcagagcuuggcugauuggugaacgugcauggcuuguguuuuugUUCACAGUGGCUAAGUUCUUCAcccgaaaagaa
.(((...((((((.(((((((((((.((((.((((((.((((.....))))...))))))))))))))))))))).))))))...))).

Structure

u   gag      c           g    g      --u    g 
 ucu   cgggug agagcuuggcu auug ugaacg   gcau g
 |||   |||||| ||||||||||| |||| ||||||   |||| c
 aga   gcccAC UCUUGAAUCGG UGAC ACUUgu   ugug u
a   aaa      U           -    -      uuu    u

Annotation confidence High

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Genome context

chr10: 15954727-15954815 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from dre-mir-27d

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dre-miR-27d

Accession	MIMAT0001799
Description	Danio rerio dre-miR-27d mature miRNA
Sequence	57 - UUCACAGUGGCUAAGUUCUUCA - 78
Evidence	experimental cloned [1]
Database links
Predicted targets

References

PubMed ID: 15937218
The developmental miRNA profiles of zebrafish as determined by small RNA cloning
"Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
"Genes Dev (2005) 19:1288-1293