Stem-loop dre-mir-100-1

Accession

MI0001958

Description

Danio rerio dre-mir-100-1 precursor miRNA

Gene family

MIPF0000033; mir-10

Literature search

5 open access papers mention dre-mir-100-1
(9 sentences)

Sequence

53058 reads, 4195 reads per million, 11 experiments

gaagagaccugccugcugacacaAACCCGUAGAUCCGAACUUGUGgugacuguccacaCAAGCUUGUAUCUAUAGGUAUCugucuguguggccuuc
((((......((((((.((((...(((.((((((.(((.((((((.((......)))))))).))).)))))).)))...)))).))).)))))))

Structure

    agaccu   -   u    caA   C      C   A      g  ac 
gaag      gcc ugc gaca   ACC GUAGAU CGA CUUGUG ug  u
||||      ||| ||| ||||   ||| |||||| ||| |||||| ||   
cuuc      cgg gug cugu   UGG UAUCUA GUU GAACac ac  g
    ------   u   u    CUA   A      U   C      -  cu 

Annotation confidence High

Genome context

chr15: 21437633-21437728 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from dre-mir-100-1

Mature dre-miR-100-5p

• Accession: MIMAT0001813
• Description: Danio rerio dre-miR-100-5p mature miRNA
• Sequence: 24 - AACCCGUAGAUCCGAACUUGUG - 45
• Evidence: experimental ; cloned [1]

Mature dre-miR-100-3p

• Accession: MIMAT0031957
• Description: Danio rerio dre-miR-100-3p mature miRNA
• Sequence: 59 - CAAGCUUGUAUCUAUAGGUAUC - 80
• Evidence: not_experimental

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293