miRBase entry: dre-mir-100-2

Stem-loop dre-mir-100-2

Accession

MI0001959

Description

Danio rerio dre-mir-100-2 precursor miRNA

Literature search

5 open access papers mention dre-mir-100-2
(9 sentences)

Sequence

53842 reads, 4066 reads per million, 11 experiments

agcugccacaAACCCGUAGAUCCGAACUUGUGgugucucugugcaCAAGCUCGUGUCUAUAGGUAUGugucugcg
.((.(.((((.(((.((((((.(((.((((((...........)))))).))).)))))).))).)))).).)).

Structure

a  u c    A   C      C   A      gugu 
 gc g caca ACC GUAGAU CGA CUUGUG    c
 || | |||| ||| |||||| ||| ||||||    u
 cg c guGU UGG UAUCUG GCU GAACac    c
g  u u    A   A      U   C      gugu

Annotation confidence High

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Genome context

chr5: 29990147-29990221 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from dre-mir-100-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dre-miR-100-5p

Accession	MIMAT0001813
Description	Danio rerio dre-miR-100-5p mature miRNA
Sequence	11 - AACCCGUAGAUCCGAACUUGUG - 32
Evidence	experimental cloned [1]
Database links
Predicted targets

Mature dre-miR-100-2-3p

Accession	MIMAT0031958
Description	Danio rerio dre-miR-100-2-3p mature miRNA
Sequence	46 - CAAGCUCGUGUCUAUAGGUAUG - 67
Evidence	not_experimental
Database links

References

PubMed ID: 15937218
The developmental miRNA profiles of zebrafish as determined by small RNA cloning
"Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
"Genes Dev (2005) 19:1288-1293