Stem-loop dre-mir-125a-1

Accession

MI0001972

Description

Danio rerio dre-mir-125a-1 precursor miRNA

Literature search

14 open access papers mention dre-mir-125a-1
(53 sentences)

Sequence

3924118 reads, 4569.0 reads per million, 302 experiments

guaugucucuuugUCCCUGAGACCCUUAACCUGUGAggucaaacuaggucACAGGUGAGGUCCUCAGGAACAgggcugcaugc
((((((..((((((.((((((..(((((.(((((((............))))))))))))..)))))).))))))..))))))

Structure

      cu      C      AC     A       gguca 
guaugu  cuuugU CCUGAG  CCUUA CCUGUGA     a
||||||  |||||| ||||||  ||||| |||||||      
cguacg  gggACA GGACUC  GGAGU GGACAcu     a
      uc      A      CU     -       ggauc 

Annotation confidence High

Genome context

chr16: 24898171-24898253 [+]

Mature dre-miR-125a-5p

• Accession: MIMAT0001820
• Description: Danio rerio dre-miR-125a-5p mature miRNA
• Sequence: 14 - UCCCUGAGACCCUUAACCUGUGA - 36
• Evidence: experimental ; cloned [1]

Mature dre-miR-125a-1-3p

• Accession: MIMAT0060886
• Description: Danio rerio dre-miR-125a-1-3p mature miRNA
• Sequence: 51 - ACAGGUGAGGUCCUCAGGAACA - 72
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293